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TransFind is a tool for finding the transcription factor binding sites several genes in a genelist have in common. TransFind can be used for searching transcription factor binding sites results from MEME , GIBBS , & TESS visually. The scientist selects the distance of flanking sequences before and after a gene. Transfind can be used to create an oligonucleotide decoy for a transcription factor of interest. Any scientist that has GeneSpringTM or SpotfireTM needs this tool to continue their research after they arrive at a genelist of target expressed genes. Current version: 2.1 Platform: Windows 95/98/ Me/NT4/2000/XP and Apple Macintosh Download size: Approx. 1.6 MB academic license $595 US commercial license $1,195 US Click here to PURCHASE now!

Click here for the TransFind demo 07/16/2006 - Dupont Licenses additional copies of BioCanvas 07/13/2005 - UK Human Genome Mapping Project Licenses Genomic Discovery Tool's TransFind 12/10/2005 - Genomic Discovery Tools Delivers Version 2.1 Of TransFind Transcription Factor Binding Site Locator Software Free Demo Downloads of TransFind are available by clicking either of the download links below. The demo is a fully functional version of the product that will time-out after 30 days.  Download Links:  trfd21.exe  trfd21.zip Subscribe to our mailing list to be notified as soon as this software is updated!

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MEME
MEME is a tool for discovering motifs in a group of related DNA or protein sequences. A motif is a sequence pattern that occurs repeatedly in a group of related protein or DNA sequences. MEME represents motifs as position-dependent letter-probability matrices which describe the probability of each possible letter at each position in the pattern. Individual MEME motifs do not contain gaps. Patterns with variable-length gaps are split by MEME into two or more separate motifs. MEME takes as input a group of DNA or protein sequences (the training set) and outputs as many motifs as requested. MEME uses statistical modeling techniques to automatically choose the best width, number of occurrences, and description for each motif. MEME sends you three e-mail messages: a confirmation message, the MEME results, and the MAST results of searching the training set for the motifs found by MEME using MAST. MEME displays the occurrences (sites) of the motif in the training set.